NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000564

Scaffold Ga0209152_10000564


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000564 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16535
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009323Metagenome / Metatranscriptome319Y
F016382Metagenome / Metatranscriptome247Y
F024995Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209152_1000056412F016382AGGAGLRSSLVEIFYESLGYCFGRVLLETLGPKVQASVYDLLARSGIKKEEISNRFDDVVQALTSTLGTCSRVVVHRTVVEMFKEYSQRLDFSYTDSLRERLTLLKEAVVANHVFPHRLRDESAFDSIEKPDWIDGPKGQAYSSLYPMKKGVKT
Ga0209152_1000056413F024995AGGMHMSLRVRESSLTNPRGNVESVPGGLSSDQRFDAEKAFSSVLVSTVREAVGNALGRNVLEVLTSNGLLDDANNSKEFDRKLELLFGNGAGVLERMVVKDLNRRLGIRYDSEASFDYEKSLETARQVCFLEGRLN
Ga0209152_1000056416F009323AGTAGGMVDTVVISTLYFISVFQLILQAGVVFYAYRVTKLTGSFRAWTLIIAAFTLLTIRNVVSLFLSLSLPADQLAALIDSVGPVTLILSSAVNIAAGIALFLGMFGLVKRFENQSKAPQ
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