NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000843

Scaffold Ga0209152_10000843


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000843 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12972
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009061Metagenome323Y
F016133Metagenome249Y
F039073Metagenome164Y
F043324Metagenome156Y
F058040Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209152_1000084311F058040GGAMVQDKILCFVCSVKGIESTFATYYELQDHLYKDHDMTKDPAMEIFAKSKIPVSKAATGQDSSK
Ga0209152_1000084312F043324AGGAMLKAARFDGDTFRELRDDPSGTAQSLSLVAIVGLCYGAGLGLFGFFIAGISVLETLTITLIGLLAAILIALVWSATSLLIVTKLFRRRIGYWGFARPFFFSWTPGLLFILMSGPIPIVFEITRATSTVWISIASVFAVKNAAGISTQQSMLTFIASTVSLIFVGTAILSFIQFLIIR
Ga0209152_1000084318F009061N/AVKGTEYPYQFADFLDFLCEKYHMDRSRLFVEYSSRQPPPLKGTRAGYYEGLLSYREKNGHSEFLITVFKASREPLLTLAHEFAHLVKNLKSGSFDKHLGPPDDTAERTVDNQAIDDLAEFRELGHP
Ga0209152_100008436F039073AGGAGVPRKRERLTVKSPEDEFAAGSDQTRQRRDPQELKIYIKQLSKALKFLPLGSRAYYAVTGELLRASTQLRALVPAGTAPKGEH
Ga0209152_100008439F016133GAGVVSRLPKFMQTLDDMIYRELERIAKRRGITIQELIRAVIVPEWINGHNGVEVKDPSPAKLNNWR
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