NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10001052

Scaffold Ga0209152_10001052


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10001052 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11338
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012334Metagenome281Y
F015579Metagenome / Metatranscriptome253Y
F017278Metagenome241N

Sequences

Protein IDFamilyRBSSequence
Ga0209152_100010522F017278GAGLFKFEALSSKDASLRSEMSEKKNVRDEVRREAREALEAMRKDLQLLSKDLVAASKTLKTSTEKFVQDTGPKVSAGLDETVETFRRTMTTIDKQTKPQKARLLRTYKKFLTKQVDFIEKKLKQTE
Ga0209152_100010524F012334N/ALVYVMSSKRPVELGRDVRLFLLFLSEINLVMGGLFFVYPSLVVSLWPWSVKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSLVSVVLAASEGGGYVVSAWAGYFLIASLGNFYLLNRYGWARKPQDRLGSDRPWKTARWFFRIQTVIVGIFGIMMLLLPDVAQHQFWPWLVATPTLQMFAGLFLATCLATGWASLQTDMGRIRVLLPLDVIFPSLALLAVAIHWDVISSQSPSTLVTGVWVFIYAFVAVGSVFLYFSSRKIATT
Ga0209152_100010525F015579GGGGGLGSDSKKPPRPKHRFSFSGQSKQSEGSATPRTANVTKGDILNSLTKHAHPLESEETGPETENAVQFQETNQTTDPARARNRGSARGALVIFLGGFLAVWLYGYVTAAYEIPYLRGITESPVVKVGVQLVSSNPILFGAAAASILLGALYLQHRKRS
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