NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10007255

Scaffold Ga0209152_10007255


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10007255 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3945
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005976Metagenome384Y
F067592Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209152_100072554F005976GGALRINILIAGGLILAVSILLVNSEFVAFIFGFALGVLNVLIGILTPKSVGITVPPAHYQGPLKLSVDKGVIRTNIYAVAFSEKKLVLRKLGSANLTVATALILAILGAALAGYFGIVVGGITAFSLQEFVTQRRRDEIKRGDILDASGGKDLEFLYDELNQIQLLRNRIQLHLKDRIVRIAISRRSSRILGPVLEKIIPAKIQLGPVPSGKDP
Ga0209152_100072555F067592N/AASGNPTQCGNALLATCNQLPIVIPVGDMAEITMGWTAPSGAFPLPWNYIYFIFVSSHQNYVDGYLYFQQGLGMPLQSRLEQRICPPCY
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