NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209801_1000002

Scaffold Ga0209801_1000002


Overview

Basic Information
Taxon OID3300026326 Open in IMG/M
Scaffold IDGa0209801_1000002 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)362283
Total Scaffold Genes361 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)248 (68.70%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000484Metagenome / Metatranscriptome1088Y
F001801Metagenome / Metatranscriptome632Y
F004535Metagenome / Metatranscriptome434Y
F011376Metagenome / Metatranscriptome291Y
F024994Metagenome / Metatranscriptome203N
F037645Metagenome / Metatranscriptome167N
F055128Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209801_1000002149F037645GAGGVRPRLAVLVALGALACGSPGPDKVAPQSPQQTLTQFMSAVKANDISRMGTLWGSDRGPAASWMKSDELKERLTVIQKYLDHAGYRLVEGPLPVAGHDNTMSFRVELQRANGCSVVFPVDLVRAKGGGWVVNDVHLASLSTPGGACRQ
Ga0209801_100000216F024994GGAGGMHCPKNLSKIAALTLLTFAVFGTACERPTPLSPPLAALSLDPAATGTSYSVIGDCAQATIIDPGSVKNVDAMMIQRGTVFDCPLTGDIEGVARVVLNLTLRNVGTPQVEGRVFGETTFLVTKFFGRTDLTGTFEGPFNTTLEEVRFGSARTRRRGTGDFRGIVLHGVAVQNPPGSGTEVENGRMVGREEP
Ga0209801_1000002170F004535AGGAMHAWGAGMFSRAMRALAAATGLMVLLALQPEPARLIEAASMHGSSHARALILSDQARRYLALEYRSYPTEFMGCMIGEVRGNAVLVSRIAPADVDPAQSTATAVLPKQTCEDAGWKETVGMIHSHPTGERCWYFFPGTQVPSSDAESFGRQPYPVDAIMCGDRVVWISRDMVQQQVRLSVRGADGRPAASPHKRGNRIHAGAASPDGQD
Ga0209801_1000002244F000484N/AMHLQAKFAQRYVGHWRVARGDTLTLPELGDRFKLVDVDLDTGRVVVDRTCRFGGTLIFAVPRAETLAVTWEGQPDQALIHGWPADLGPFAGIGATRVGDSLVGAILFDSRLGVEVRPGVTARFVAGRLSLGTARNGRRP
Ga0209801_1000002251F011376GAGVSAPPQAAVALAWAVIGPPLVIFAATRARRGQIPLHVTLMTVSIVIEVLVVIGFSFLMAPSPRRPALVALPFFKIHLTFAVTTLVGIAWQLASRATPRLRWLHRHTGPYVVLTWALALITGIYNYVFLYLMGSR
Ga0209801_1000002252F001801N/AMKIFLRNLILCALPLLFAAGAGHYFTTIQGSCGAMVGALFSGKCAGRQREYHVRFQLGGAGVGVLIAATLGTWLEHRRRRAVQSTTPAGEPS
Ga0209801_1000002323F055128GAGMGKRVLLATGDLLFRSKLSAVVTAAGGEVSRDAARCDLAVLELAEPGATETIGELVGRGIPVLAYGAHVRPELLRSARDAGAMAVPNSQVEARLRDLLKQ
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