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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026326 Open in IMG/M |
| Scaffold ID | Ga0209801_1000003 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 321246 |
| Total Scaffold Genes | 314 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 199 (63.38%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000871 | Metagenome / Metatranscriptome | 851 | Y |
| F002395 | Metagenome / Metatranscriptome | 564 | Y |
| F005616 | Metagenome / Metatranscriptome | 395 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209801_1000003186 | F000871 | AGAAGG | MRWLCFLLLVSPAPARGQTEGGGPKPLRFDLAALPATRDSFVFRLNGQDRGWAVWQYEIRTLEMSQELVYTASSEFQPIEAEHLKVVVNRQTGEPISTFHHIDVFSPQSDTVMVEHDLEVKRGEISGRRRVGTKSGEVQIVPVHHPFPTGTVLGDYVFLAGAATNATPGDSLAGPAYKEFADSLTTLSFIAEPPTTIDVPAGRFDVLPLRSGGFRIYTTRVPRRVVKGETLDGAFSFELVHSGPVVPTPD |
| Ga0209801_1000003204 | F005616 | AGG | VRPSTPTYAADQLRADPRDFRIPRTADRDLAFRGWPLSHAEERSGSPGALRGVDVDIYMTIGLRLVGHVCHWSLDDGEGFREEHHVAVHDTAPDLVQWLKQDNAGLLDAPRKRAWIGACQAWPGLKREAVERVD |
| Ga0209801_1000003245 | F002395 | AGG | MAGDTGERIKIVIGYAIWATLCAAVAGIAVSFIHTAFFSYHAGRHEFWRVLFDDVVATLGIAAGQGAVALLSGSILAQLGRSLHATVLLGLLVGLFDFVMNFLQMAVPRTELGWAPDLVILAVATLAITVFGSRRPAAVPPAQPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |