NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209801_1001407

Scaffold Ga0209801_1001407


Overview

Basic Information
Taxon OID3300026326 Open in IMG/M
Scaffold IDGa0209801_1001407 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14822
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005976Metagenome384Y
F081165Metagenome114N
F085527Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209801_10014071F085527N/ALVPVNGVCLITSTVNGNVYVSNGANLTVIGGTINGGLEVDSASSVTLTNAGISGFTGLYNVQTVSITGSRFNTSGNLGICTDACGAAMYAGGRGYFSMTNSNVTGQVENEVGHNTIVNNNHITGRLEIESADLGQIINNVVGSLDLDQNGTIVIAGNTVNGTAKYGTNGWCGTGNNQISGSTTGTCIGNVEMDVSNTGSTPVKFVAVYMTNIPLAGSPSWQLASGNPTQCGNALLATCNQLPIVIPVGDMVEITMGWTAPSGSFPLPWNYIYFIFVSSHQNYVDGYLYFQKGLGMPLQSRLEQRICPPCY
Ga0209801_10014073F081165AGGMIFMAWAFYVETTGRGALFVEPNRVLAAGELATVATGMIALLVLFFRGLSQKEQALTESLQE
Ga0209801_10014074F005976GAGLRINILIAGGLILAVSILLVNSEFVAFIFGFALGVLNVLVGILTPKSVGITVPPGDYLGPLKLWLDKGVIRTNIYAVAFFEKKLVLRKLGSANLTVATALILAILGAVLAGYFGIIVGGITAFSLQEFVTQRRRDGIKRGNFLFTLGGKDLEFLYDELDRIQLMGNRIQLYLKDRIVRIAISRESSRILGPVLERIIPAKIQLGPVPSGKDP
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