NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209801_1002424

Scaffold Ga0209801_1002424


Overview

Basic Information
Taxon OID3300026326 Open in IMG/M
Scaffold IDGa0209801_1002424 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10894
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051039Metagenome144N
F077145Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209801_10024243F077145GGAMAVDTQGKSAWTGKDVSEREINLLNQRVIQFTDIEDTFLDVWLQLENANLDELAAKIINAGLLFEHYLSQLPNDPTQRSPEEIAQLETYRSDAGSALDEGRAALASTMTTVGVGSNMTSSLASTAIKTGTLTFWSYLAFQEYLAVAAGNILSVVGFGVAAVAELFLGFWLAGYKGATNRYTGRNKTKG
Ga0209801_10024249F051039N/ALPEHVSNPVAFHGKTAWITAFIIALIFLMPFLAISLPSVTLPGTRAMDVTSLKTPTYAESSRATILDENNWTMWSLTAQQFGATLTYSSDGLTLTGSFPPSTQPLALSIVRALTANLTAYPIMYMLINVSPNISYGIRFYSQSSGSAVPLWAESDALSHREGKGQAENVQVNMFQLIESNTGKVYDSTSNVTIYAERSASTQATHFSLQIKKLEFLNFPLLSAPASGSYHAIYVGLGQIQENPSFTLRSVEIRGTINASKGMVFVPYFIDGLSIYQGRVYTLSTVPIDLFVTVAITAQGAKSFSDNLPTEKAAIVLVAASGTFTRLSVENISLNYYSKTAQTSSIPFQDRNGYLNNAFFFLLLPVSVIVLLYGQVRRAKHIANSQSSVSHSDADR
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