NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209801_1015878

Scaffold Ga0209801_1015878


Overview

Basic Information
Taxon OID3300026326 Open in IMG/M
Scaffold IDGa0209801_1015878 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3777
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005263Metagenome / Metatranscriptome406Y
F008300Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0209801_10158781F005263N/AMARLTRRTFAIEPDVSEKIDALVNGHTLEANLLVNKALRHYLEWGRFVENFKLVISDPRLMKLLWSHLTVEEAREMGLQNGNSAVVEFILYYFRKFDLESVLKTFRVIGAEYSNAFAYSESGDDRNRTIILRHSMGQSASAYYGASLKALSIRLGMEVELEETDDQLVCKIRRVDKEQTIAPKTPKS
Ga0209801_10158783F008300N/AMKHFTEIENFTFLAYTLAHELGGTTPRPIRTVTDLQVPDEEFQNFINEAKTANLTDEELADTVLDVGINWEHFVASTDNLLIPEHPLKITDVLMQEKIDSLDIITEAFVREINLRSIEKKTGTKSRES
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