NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209801_1019058

Scaffold Ga0209801_1019058


Overview

Basic Information
Taxon OID3300026326 Open in IMG/M
Scaffold IDGa0209801_1019058 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3397
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001571Metagenome / Metatranscriptome669Y
F069876Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209801_10190582F069876GGALANGVNGGDKRKRRPAQKGVQAVFTPDAGWKGRAQVALGLITIGVGTVAWVYSTRGLRGLGLGDRIPWDSSVSAFLLPVSIPLLIGGVSFCTYYLAMRTTWRASSRIESALYELEVLVGQKSTSQESPAVLGVVMEAKRAGRRLFGLPSKALSIALVEAIVMILIYGGLVQEYSSNVNMQNWVRANFALGRYFLNYYGLLILAGLLGVAIFRLIPRRLQSRNLQG
Ga0209801_10190583F001571GGAGLRNMTSTVPERRLALIHRVIVPDQEHPKEYAILVTDRRSIFIRQKKTRGNFWLRREISYGTALITDLIPKTLEDYQQTSVESLTADSTNIMVHHEAVISLAMKKEEQQPRKYDFFVRLTMRMQREEFQVYDFEMNYRESPNSETMIKFYMVPLGAYFKPRRQTQTRETILREYATDALEIFQKVLPAKIVA
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