NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209801_1043488

Scaffold Ga0209801_1043488


Overview

Basic Information
Taxon OID3300026326 Open in IMG/M
Scaffold IDGa0209801_1043488 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2070
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031217Metagenome183N
F090208Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209801_10434881F090208N/AMTYPTRPIHVTLADHFADAGVSRHPLRLRLASGEELDCHSPSFDVDELVLVVTTYDGVARTIRPGEIQALYERRARWLAYAGLTIATVAIGAGISALLVPLLTPLGAVYGALFGALGGAVAAAVVPSI
Ga0209801_10434882F031217AGGCGGMRASRARRCATPLAAAVCALALIPVRGSGQAPPSPRAQVVWHWFGGCAGTDSLVLEFHVDGTRVYSATFPLCQMRRADIRPEPQQRVLTFHFDAAPHRFGRQYRALEPEPITGNVWEAGRRQTAVVLGVSFATAERVLLNTRHAARPDRPARSEWIRGLELITRPVRRN
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