NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209266_1041572

Scaffold Ga0209266_1041572


Overview

Basic Information
Taxon OID3300026327 Open in IMG/M
Scaffold IDGa0209266_1041572 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2337
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003512Metagenome / Metatranscriptome482Y
F009420Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0209266_10415722F003512GGAMPNQSAAAHHLATPFPGPQPWEAPDPLPVMRRELKLLLIEMNVLRVEVEQLRAMKREARDREEFLSASVNRLMESRDHWRREAERLCALIVQVPPWSLFWWSCVDAFKAWRKPTDRGLHH
Ga0209266_10415723F009420GGAMADQNEAKTKTIGFLPIEKAQSLRGWDEYIDKSTELSVLRTEAQKAKSAVRDALKERLNENGDIDFVGEGDRVRVFRVFRKQQGRRTKSLDLSSSFREQPLEGKAETNSHYERVCEETEASTPN

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