NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209266_1086619

Scaffold Ga0209266_1086619


Overview

Basic Information
Taxon OID3300026327 Open in IMG/M
Scaffold IDGa0209266_1086619 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021503Metagenome218Y
F024982Metagenome203Y
F042270Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209266_10866191F024982AGGMDEDEVHEESEVEKSINVWRQSERKIMIETVQDLIQTSHKYAKSQYTPSAQRARWTKLAGQLIWYKDQILKNFSLEAMTIELQTLKKQIRESEERRERETRTRNYQTIV
Ga0209266_10866192F021503AGGAMSSLPLKPPAGPKKLKKLLEKYTPREAYEILAAQIILANERTRDILPPSRVHAGSRKISITESGLQDIRTGRYGRVQLPSQEEARYWLQQWREAAKPKQETPVRKIFVRRKRSEVRE
Ga0209266_10866193F042270GAGGMTKNKTLEGPLPPADKGVNDARPGLPTPTVRKNVTWVQPEPTTSDVTRPQQLSPDTTWAEPSTSKPKLAKGSTGISTTRDRTNE
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