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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026328 Open in IMG/M |
| Scaffold ID | Ga0209802_1000022 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 92800 |
| Total Scaffold Genes | 108 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 78 (72.22%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006839 | Metagenome / Metatranscriptome | 363 | Y |
| F009739 | Metagenome | 313 | Y |
| F009951 | Metagenome | 310 | Y |
| F010906 | Metagenome | 297 | N |
| F012492 | Metagenome / Metatranscriptome | 280 | Y |
| F024757 | Metagenome | 204 | Y |
| F032984 | Metagenome | 178 | N |
| F036617 | Metagenome | 169 | N |
| F105712 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209802_1000022100 | F024757 | N/A | MSLPKPGDNVKVILLSGETIEGVVEWIDGGGAWVKGAQKSRWVPLEAFQPPPQADDSKDD |
| Ga0209802_100002217 | F010906 | GAG | VSQQEDLSNLRNLVGAENVLAECAGVNYTVYVTDSRLLVGKRFGLGEKYVNVPHAEVSTLELITKSLIPPLTYAVLGAIAVFLVWWFPGQARLSLPQAPFDLILIGTFTVFLAAVVATWWRRRVAVLRIGISGTKEPITVKLVPTSKAEGVFKALKG |
| Ga0209802_100002219 | F105712 | AGCAGG | MILPAYLNYELFHRLNLDITVSMSISLTSFALGILIFILVVGKERIEGPKKQ |
| Ga0209802_100002237 | F006839 | AGAAG | MSAPDSSESSWREHPPLNVEKVEDDSSQYLQEACYYLLKKGLTLEQVSKALEVSEQEATRLYREFESKIASGKREENEIDRNLWEDVYNDSVGNEKITFVRDNGFYHCRRDDLDKMDSPALMAIFETSKKFLDFDMYRRYLDSKPPVGYDPMAMQRQIKRAVDLIEQILKQRWESGETKKNDSLSR |
| Ga0209802_100002247 | F036617 | N/A | VAFANIAMTLALLAIYLGTYRKVKSSFTMGLVLFGSFFVVLNLAILVFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWK |
| Ga0209802_100002254 | F009951 | N/A | MLEEKVGKALGEARTKLDAALDHLSKGGTDSEKKVWWAEEATEYSSLLYSLTYGLEDEDPPVPVRKRNAEPIPLVKESSESLRRATELRGKSPLEGYRYLRTAVYKLREAHHILEKARTKKR |
| Ga0209802_10000227 | F012492 | GAG | LGVEGEEAQPKKSGSRRYIENLLGWPSEESTGIGVYQTALFTSLLEYFIVLFFGTWLIVEYAYNVYEQQYFGSFNPVFLVAVLMVASGYGFTRLVSTVRTSLRSTRVKKKVEDDY |
| Ga0209802_100002280 | F032984 | N/A | MEKATQMQRGLMVRVVLSIITLAAFLAGSLIVVGFYTNYDWFQKIVVILVAMIIAFAALAIMWVTWAGRRGMMGWWRD |
| Ga0209802_100002291 | F009739 | N/A | MSEGLEVRRVSLVDLLISIGSAGLAIFSVPTVLNKNSQVPRKTASIPSASILTYFVPLFAISGLDLTAMTIAGQAIVWWLIVALRPVRKLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |