NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1000125

Scaffold Ga0209802_1000125


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1000125 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55967
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (72.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008999Metagenome324Y
F011834Metagenome286Y
F023811Metagenome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100012538F023811GGALLRPKRGEAIASVLFAFTATGLIALLYNLNPFNSWALLVGVWASSEALMLYLFQNQRRNEKKFQKRPVSFPNPEGGGILGEYVNRPWHNELAELGRRYPSKKAKKKKKD
Ga0209802_100012552F008999N/ALTEYSVHTTRVAKKFEWFGMTVVKRYLTRDKDSRDLRDVHSNPEFYHKGIDLILNLPNVQKRTIDLKVDSYIGSDPSRKIRGLCNPDSGFILLETISQLQYDRSRKISPNGTLLVSQKADVPGWFFTSSADEVYYYFLALLNTEDQLNPLYAEYVELAKGNQPTDEVENRLLRELRVDRDLLVSFSLSEARAWYDTAPETVFHGYAPAPNPSYLTLSKRVKRDLFISNGIGKSHGSIYSLVKPKSVSR
Ga0209802_10001256F011834N/ALFSKIHRLADGNVVVESDFYRVRLRFKRLFADPAIFEDQKNAVRRFLISPHLASNQVAIYQITDDISPSDNVGKSPDIAGTAKYIHRGRVVRSEYLENSNVTLEYADFGSGLSPDDHQRLWNRRKWGRMNFDLEEFHHEHLKIEIPAVPELYEMLRSRADPTTLVDVELPELSDNFFRSAVGYLEIRLKQLAELEHQIIDIYVARDLLPEEKAALEKRLTRPSTQSTIYIMLSKAEGTAH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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