Scaffold Ga0209802

Basic Information
Taxon OID	3300026328 Open in IMG/M
Scaffold ID	Ga0209802_1000164 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026328 Open in IMG/M

Scaffold ID

Ga0209802_1000164 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49884
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (67.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

49884

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (67.86%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000916	Metagenome / Metatranscriptome	835	Y
F026237	Metagenome	198	N
F055638	Metagenome / Metatranscriptome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100016423	F000916	AGGAG	MLRKTLAHYLLLQVGTFVGLAGFDAVGPAMNMLTDMKANLKVEEIKTKGEGNKVEALSQNLAESMGETFASDYDIETGDGVRTVKLDRCGCIESVLAQAEAYGLTKPQARSIFCSTCIGSYKKAAETLELGFQGKLRGEHGCSMSFSKK
Ga0209802_100016424	F055638	N/A	LSGTSFNISVPGSLDTIAVALDVIAIGAVLVLTTLSLILSRGLNGTGLRRGFALTAVAGFVQIIGSATQFAVDLGFTSSRLPPNIFSGIQVLFLVLLALAVQSFFPVWFKSFKGENNPPSQPRDDPHSSHGSVSPTSS
Ga0209802_10001645	F026237	N/A	MALVFTIRAKKTYFLDSVFFIAVANVGFILFLSDTTASDLLNKPPSPYLDTLFLALTAISIGFASYLLKESEGKGGFTEFTRFLKRPPKALLVFLFISVGWSTTALIWQPFTVNSLMTNGEYIYYFSYPTWYLASSSLLLASFIALPVLSFYEQSRRVQDPKASGSIRLISLCWACFGLITFLQEAFAGSYASLVKSFGSLADGTLFVLVSFALREPTILSRIVTGGEMISQAVSSRTEEDTIVLYNTESDRKRLVERFMDDGIATGQELVFFVIKSEVPFYRAILKGTGTDHARLRGPQTTIQSIDFGAGETLSDLAVPPGFHRSKRELVDLGELSLDQCNLIISKVKSLDNLPGPRRRPRIWALNVEEAQSGTLEALREANPKARVRDLALQQDSFSKLLNTKHQALSRSRILLEYDPTSNYEDAVQKFAREFQANVEPIAIFTSMGSPTFRQFRGQHNLRMFTFSTKTSTPSKVSEELVLLPERDTSLLLDAVDKLLQANHGRLVGMVFDVFTDLILFQGFEKGYGVLSSVVEMSESESASTLVLINFTALDERSLNGVRGLFRSQAKYDMDGFKMVRTQNTGYSGFESKRPTFEDESQGSDGRVSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209802_1000164

Overview

Ecosystem & Geography

Associated Families

Sequences