NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1000306

Scaffold Ga0209802_1000306


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1000306 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38031
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011833Metagenome286Y
F016379Metagenome247Y
F022166Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100030617F016379N/AMPSYREGFVKLLYGIILAQFLIIAILLGGFSSEYLSNVYFRIWVDNNFPQLGLLLTGQVDALLVGMALGGTILLIQRTKHEARMDEGIAANLAQPGSLTQTPELLPNHATPSRKSEVGKETPEQVLGELEKTDF
Ga0209802_100030618F011833AGGLLLAPQPILLALIIFNKVSLYYSAPVIVSLAVLWGWFDYSGKAQRRGASVLRKLERLVDDFGWLNFQEGAGAGNEMVVTLLDKASFGSSTLTTPQLANATSEKIKEVYFTLELWYFSMRQKVRLLLRKVASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLASLESEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSETKVRALEVDPWFKIGTQTSETKESPS
Ga0209802_10003063F022166AGAAGGLAATLPRVNFLGVIAGILALVSLLFPWWGIAATGFDSSSSSMWGLFGGPSHNPDINNASSFSNTIATYSPIILVLVLLSTALAIAGSFTPRIRILAGSLVTSVASLVGYAELISYTASNNCQGNGCISSSTGSETIFGVTLTWGFQLGFYLFTAATILILIGLVFHVAMTKHRAKAETSKQNG
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