NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1000350

Scaffold Ga0209802_1000350


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1000350 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35513
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000186Metagenome1702Y
F001899Metagenome620Y
F003458Metagenome485Y

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100035035F000186N/AMERELAFKLQEACVCYQTQVEIPVTTADFYFPLETRPLIVFVDGSVHLGKTQMFKDEELRTLLRKKGYRILELFYNSYSIEKRDELYLQILENVGKSRSEA
Ga0209802_100035038F001899AGGAVPVICGFRFEVRPEDEVVELQADHHIVRVCVDCLTLLTVHRRIHHMKVEKVIVEMAERRPLVAFA
Ga0209802_10003508F003458GAGGMAESRIPPGASLLLIGSGLYWILSSQLISSFTVLTPELFQADSLGASLITVVGIISATVGLWIVKVDFDELRSLFSRSDGWIFTVPLALVAADVYLTLIVLSTNSQIVELNPFVSSAIGIGAAALIPFIISYLALSQGLGLFMLRVGSYLFGPLKSWRYLPFVSICGAAAFGPASNLVLLLDPTAGLVAYLLGTLGCVMLSIFLFTKVEKHDLGKPKFQRP
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