NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1000514

Scaffold Ga0209802_1000514


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1000514 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29525
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (69.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005447Metagenome / Metatranscriptome400Y
F008019Metagenome340Y
F010240Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100051429F005447GAGMVNRKRLAITALVIAMFLIAIPSTTPRVYGAAAPCAQKCSIAILSPGGSLNANQNVNSSFIVSFAVFNFTLVQPGMYTDVNTTLGTGSTLHSEGHIHVWVDNAYITIWTSTNGIPLTLTPGTHTIRLDLVNDKHQKFSPGINATTTVNVSDPLQSTANNAQSNASNAMYYSLGALIVSIVGVILVAYVAFKPKPKP
Ga0209802_10005146F010240N/ALPRRILPATKVREHLGVYLLASLSNAFLASSQYLAVASAVASYLPVDSGTATLIAAYGPGLGIFLTVFLNSLVFQGILAALVVILSLSTVLKTGWRWAYAFSGMMVSGFVGYWLGARFLVVLEWISTLQNNRVDSSNAYASLFWLGLASTIFYLAMILVLRKSYGTLTEQTGRQR
Ga0209802_10005149F008019GGALGVRKKIAISIVLIIIVALAVWQFTSPQLLPMVGSKYSVFGPYSNRGSWTIMEMMRYGNVYLAISISNVTFPRTGIGTDYSLVISDLNQTITNSIVKGFGVRVTGMNIQDSVDGSTSTWGNGNAVSDAAQATGIFFFKTSTNHMLRFTVAFQLYDLLPLGSIPDQTVTRSFNITQTVL
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