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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026328 Open in IMG/M |
| Scaffold ID | Ga0209802_1000956 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22224 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031048 | Metagenome | 183 | Y |
| F040029 | Metagenome / Metatranscriptome | 162 | Y |
| F045026 | Metagenome / Metatranscriptome | 153 | Y |
| F069926 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209802_100095611 | F069926 | GGAGG | MKKLVIGIAVLAALLTSLFLSYWFDPGRVIWTKDGTVAAVHQYPDSNTGTNWNVLVYIYQQNDMGYLVNTGYVALNGFGTQGHGNYCWNDGNGKCLNVPLSFSLNQTLAVDALNDGNFMIRNSHI |
| Ga0209802_100095613 | F031048 | N/A | MKLKPKRQVRLALLLLSTSIIMITSLLGYNRIAYEFPLAVGNTGQSALGPPTSAGVGIVFAMIVVATILGFGAVLSIFGSLRNVSNRISEIVIPKPSPKDSIYESQKEAEWEEASTQTENKATDDEILKALWHSKDKKTGTAE |
| Ga0209802_100095614 | F040029 | AGGA | VALAPEFFVLLAISIFLAMSVISALLDRHLSSILQYLFQGAAGVGLGELLLSQGLSSPTRVWAGIVYLAFALSSLVGVNIRLAIVRRGMNIASMFSQMMTVPVVMISALFLSSFLGNGGDLVFSPASIVTIAVSVLVADLSIFGLLREYSRHSSIRSGLVSFSTSAAPASTGSVGTTLDSQQLSEQDIALHHDSTQGEDWEESPSKEKE |
| Ga0209802_10009563 | F045026 | AGG | MPENQKTRANGLVIQGIPSLEMRMREVRAIGRRMLEPDGQRAGDAQAASGQVISQTEIGNGAIRQSRVWNRLSDEYPDPANALISSVQEMERIHD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |