NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1001734

Scaffold Ga0209802_1001734


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1001734 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15783
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012009Metagenome / Metatranscriptome284Y
F091786Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100173411F012009GAGGLSPARSPVKPVTPSSVKILMLVEAAVVAFLAYWIFSEYVFNAYFRDYVDQLLGTRGTTFTAAIGLGIGLAGSAIAATLYRNLQHARSRLETMAAPKIRGAVEKILSSLPVVEESQRASVARVTAPSAMTLSSPSQGTAPVSALPENEQKKLSDSKS
Ga0209802_10017342F091786N/AMTFMAMTGKKGHAAKRQTRSKSSTGKVKTTRGFNHTKASSKGTSRRTTSRTPRQQNSDATYIFECTRPGCGYRIPREERAEQGSIRFDLKCPKCHSKEFKCLGKGDLPEAFELPVPTTNIDFDTIKPVDLGSN
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