NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1002242

Scaffold Ga0209802_1002242


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1002242 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13639
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005777Metagenome / Metatranscriptome390Y
F023072Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100224215F023072N/AIDPVLFAGSLLIATALSYGFVYAFVRWRRAKLDALRAAKKPIPYRKVQPYLLTKGEVYALLGGLLLLQAFLDVAIFRAFLDTLNNFALLEIGMVLVAFAATVHIYRVGAQVK
Ga0209802_10022429F005777GAGLSKPDLEAKVSPKIAEAFRTAVDKVGREEFLAMAEIDDQRFQTILDGTDEYVSLGLVMLACQINKSHNDPNPNHSSVTECLKGSTIRIPSSGNPAPPRMIAKSISRSQFRRLKDDAKSPGPLYEKTTFRLVGFSANTVAFLILGYFLGGIALSPLLGQPSCTGVSISPPALIPCSGSIIGLVVSAIGGIGYTYYYFAKKL
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