NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1003524

Scaffold Ga0209802_1003524


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1003524 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10476
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029697Metagenome / Metatranscriptome187Y
F043312Metagenome / Metatranscriptome156N
F069956Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100352411F069956GGALDRAEFDSVIQVSLSNTLKSVGEDCLASVQTLLGGERGPVESLVEHMGDVDAVLDELFGKFAKIIKHITILQASSQLKLDPPSLGSSLFWMVEELRSALWKGQS
Ga0209802_100352412F043312GGAMRTPNVTLIHETVSLCFDQVLTTMGEITKRMTYDFLKRKGVGREDLLSRFEDVENLLVSLYGQGGRSVIIGTLAKLCEEYSIPLNLAYSDSLSNRMAQLTENILMQKLVPKHFRKDVDTRAFEDKTGSYAGWTD
Ga0209802_100352413F029697GGAMRKLTLLIGVILLFSGVIAEALYITTAKVAYSGIVANIYLTGGILFILLGFALMLASVRIPKLRVP
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