NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1003733

Scaffold Ga0209802_1003733


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1003733 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10125
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016256Metagenome / Metatranscriptome248N
F023306Metagenome210N

Sequences

Protein IDFamilyRBSSequence
Ga0209802_10037331F016256AGGLRFRPLFKNKRGIDTIIAGVLMVLIVVIASVMVYAYATGLFGAIATPQKVATEAISLEYASFTNNSVVNLSIRDIGTTPITLKSYYVNDYTGNQYTRANWAQGSYPPNSIQPTTLGNATILISSACSASCTSSGTPFVFQSGYPYTIIMVTATNEQFSFMITR
Ga0209802_10037337F023306N/AMERTTYVSSGLPFGGFLRRLPFWLGAVIVSFVPTKILSTIDYALAPPQGIGNLILDDALFLSLIMLYFLYAMRYITRRIDRLGDYVKGMNLGNTALHLGTSYRLSRVLLIWIILLGIITLLSPIPSTIEKVALEQIPVFAYFFLILALFLWTYGSSMLAIYRAGKLPFQLKPFTEDRILGLKPFGTASMRLASVYAIFPIIVTITQLFKINVEVPGGVTVEPGNFEAGNAIFLGGLILVGVALFLLPLVGIHRRLQDARRQELNWITPRYTSLVQRLKDRMSHSDKFESVNEKDALASELSIIRQIESDIHRIQTWPFDIGVITRLATVLVLPPILGVIARIMILIFLRI
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Institute for Fundamental Biomedical Research
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