Basic Information | |
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Taxon OID | 3300026329 Open in IMG/M |
Scaffold ID | Ga0209375_1231858 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 641 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000395 | Metagenome / Metatranscriptome | 1186 | Y |
F045000 | Metagenome / Metatranscriptome | 153 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209375_12318581 | F045000 | N/A | AAVEAFKSHVTEAGVDGGILFATGAFEPEALQAARDGGVALLRVTDGRTAFDTSGWGTPGHYPIWLPAYCAQAVGRDTAGQLRYQLLEQGQGDLILDQLRAPGDAESARGA |
Ga0209375_12318582 | F000395 | AGGGGG | MAGQAPQKDAMDVLQAWVNDYIARAHPAFPLGTGGEAGGAQLRLKYTPADGEVSILHMVAVTRNGRAAILVRRFDGAMPETAVQAGLWASTELG |
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