NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209267_1001034

Scaffold Ga0209267_1001034


Overview

Basic Information
Taxon OID3300026331 Open in IMG/M
Scaffold IDGa0209267_1001034 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19421
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015711Metagenome / Metatranscriptome252Y
F036617Metagenome169N
F054720Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0209267_10010341F036617N/ATYRKIRSSFTLGLVLFGSFFVILNLSILVFWLFLFQNVNVSSATTLVDQASFYMLLVNVGEALAISNLLRVTWK
Ga0209267_100103410F015711N/AMSDSDTMNDTDYRKTRRSAKLVGTVFLGIVVILSAWFALAYFHVAYLQRYILDSINPNGSILRVILIATLGGFILSVPILRSLSRNEKTSQVKVQPVPGFRSPRVHPLFTTSRPARDTNFVIRKTRNRGRISRNRAGERLPPSYQE
Ga0209267_10010342F054720N/ALTSEERVENESENNQNKKVSRREFLKFGVGVAAVAAGATALMGKIPLPEGQPSKKTPGANESSEPIVATVSGDQVTVMNGQTIVKTKDSGLAALIAEKMSAGE
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