NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209267_1001748

Scaffold Ga0209267_1001748


Overview

Basic Information
Taxon OID3300026331 Open in IMG/M
Scaffold IDGa0209267_1001748 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14578
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023306Metagenome210N
F025944Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209267_100174816F025944GAGMSPSTTEQSNHSYRAIPGYLKIIILAQAATILSLTVWMYQEYLNDAYFQQYVISLLQTSILADALLSMVTMSVFALGTFTLLGSMGTGRRESKEWRLLSKQAKAPDMPSLPTLEMAKPPSKPRSTSRRPRQRRPMADTAKIFGSMRYFTDDHKQE
Ga0209267_10017489F023306N/AMKSDGHAPNTFPVGGFLRTLPFWLGAVIVSFVPTKILSTIEYVLVPSQGVGSLILDEALVLSMVMLYFVYAMRYITRRIDRLSEYAQGMSPENTELRLRRPPYRLSGVLIVWVILLVVINLVSPIPLSFEGVVSNHVPVFAYFFLILAFFLWTYGSSMLAIYRAGKLPFQLKPFTEDRTLGLKPFGTVSMRLVSVYAIFPIIVTFLQLITINVEVPGGVTVGLGSFRASDLIVLGGLILVGVILFLIPLLGIHRRLQEARRQELSWITPRYTNLVQRLKDRMAHSDQSENANEKDALASEISIVRQIESDIHRIQTWPFDLGVITRLATVLVLPPILGVVARIMILIFLRI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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