NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209267_1002183

Scaffold Ga0209267_1002183


Overview

Basic Information
Taxon OID3300026331 Open in IMG/M
Scaffold IDGa0209267_1002183 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12802
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028131Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0209267_10021831F028131N/AVRLAGTVSVRLTVPVKPFNAVTVIVEVAEVPAWTGAGEVAAIVKSVTAKVAVAEWDSVPLVPVIVTE
Ga0209267_100218314F028131N/ALVTLLGVMAPQVRFVGTVSVSDTVPVKPLIADTVIVELAEVPTVTAAGDVAETEKSVTVNVAVVE
Ga0209267_100218316F028131AGGAGLAGTVSVNATVPVKPLIAETVIVEVADVPALTAAGEVAATLKSVTVTVTVAE
Ga0209267_10021835F028131N/ALVTLVGDIAPQVRLAGTVSVNETVPVNPFTAETVIVEVAEVPACTAAGDVAAMVKSVTVKVAVAEWDKVPLVPVIVTE
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