NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209267_1013881

Scaffold Ga0209267_1013881


Overview

Basic Information
Taxon OID3300026331 Open in IMG/M
Scaffold IDGa0209267_1013881 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4244
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064589Metagenome / Metatranscriptome128N
F074683Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209267_10138814F074683GGALSRSRRRFIYTGSPARQSDRQILQISKRHLPVVGLLGLVVMAAAGGTVYYYQFLTPHQSTCGVPSHRLIFMRAEIQEVGGFKVYNTAFLNQTTLPAFNASGPALGGINFKDYKPSSNDNKTINVNVGDEVTFYIKSVNASDSRQVSSSHGFQISGPATLAVVSGSLPAAGATIPFGTWFSVTIRFDTAGAYIYFCTVICSAQHGSMNGNISVSCGTSV
Ga0209267_10138815F064589N/AFRRLQPYMFSKSEVYSLLGGLLLLQAFLDVSIFRALVENLNNFVLLEIGMVLVAFAAAVHIYRISSQAK
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