NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209267_1028653

Scaffold Ga0209267_1028653


Overview

Basic Information
Taxon OID3300026331 Open in IMG/M
Scaffold IDGa0209267_1028653 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2688
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006617Metagenome / Metatranscriptome368N
F010240Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0209267_10286531F006617N/ARVTPALVVMRGEGRDEGANMVGAKPMLLWYVWIRLVDGAWHRLDDISKQLRLPSNAIEWAAKFLCDKGMAERGFEEDEIRLHQGNAKFEDAVKALSPSSKPSK
Ga0209267_10286533F010240GGAMIRQERWVLFRDLPRRILPATKLREHLGVYLLASLSNAFLASSQYLAVSSAVASYLPVDSGTATLIAAYGPGLGIFIALLLTSLVFQGILAALLVILSLSAVLKTGWRWAYAFSGMMVSGFVGYWLGARFLVVLEWISTLQDNRVDSSNAYASLFWFGLASTIFYLAMILVLRKSYGTLTEQTGRQG
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