NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209267_1139798

Scaffold Ga0209267_1139798


Overview

Basic Information
Taxon OID3300026331 Open in IMG/M
Scaffold IDGa0209267_1139798 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025944Metagenome / Metatranscriptome199Y
F058902Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209267_11397981F025944GAGMRMSPSTTEQSNHSYRAIPGYLKIIILAQAATILSFTVWMYQEYLNDAYFQQYVISLLQTSILADAILSMVTMSVFALGTFTLLGSMGTGRRESKEWRLLSKQAKAPDMPSLPTLETAKPPSKPRSTSRRPRQRRPVADTAKIFDSMRYFTDDHK
Ga0209267_11397982F058902AGCAGGMAAETKGRDSWSDEESPRENIRQSSPLKLSRVFRFIDQQTGVSQISDFPDSNPPGDTPLEIRMKHFTEIENFTFLAYTLAHELGGTTPRPIRTVTYLQVPDEEFQSFVNEAKTSMVTDEDLADT
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