NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209803_1001152

Scaffold Ga0209803_1001152


Overview

Basic Information
Taxon OID3300026332 Open in IMG/M
Scaffold IDGa0209803_1001152 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17475
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F095252Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209803_10011522F095252AGGAGGMKRSLLAIALVTGFIFMASSVFANPALLKKRHEGYPNPDGGTTATGNAAAEKSAADAPKLLKDQTKAAEGDIRDQDQIKHSQDSRLPEVVAPHHVTTKGVTENQIKNATKVNAEPK
Ga0209803_10011525F022846N/AMPHASPEEVGRELSDLAFGIVEQNWLEQYIGKVVNLTALDQLQLNVTEWELTYLILFAITNGCGTFSAADSERTTAILKAFHSTVLSHIAEQAGQEVADEHKKNLPARYRLYGPAIEGEDTNKPYKTPYRLLGEAAALQILGKPLTDPHDADNFRETIKVIFTEVREATIKIMSFQQAQAIEGKA
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