NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209803_1003281

Scaffold Ga0209803_1003281


Overview

Basic Information
Taxon OID3300026332 Open in IMG/M
Scaffold IDGa0209803_1003281 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9771
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011289Metagenome292Y
F025571Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0209803_100328110F011289GGALGSLIFENARLPLGFVRESDSSMGLASMNQVSRKTLTIGVQSILNIFLTAWLYNEYIHNRFMQDYLASTFSSVVIPVAIGLLASAAIAGGSYMAYSRRQQASIGNGLRPLKVRVLEGSEGTLAVLDTCPFCNVPLKNISENRFQCRKCRRYFKK
Ga0209803_100328115F025571GAGMTGHHPVGHGKSAPTTPAGWVDYWIHYYNRSRQLKKASQESWNATREVWKRKLVQAKRIRCQKCVAIIKLWLKTYGYGPKGSVLKENIAQQGKTRRTTF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.