NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209803_1052477

Scaffold Ga0209803_1052477


Overview

Basic Information
Taxon OID3300026332 Open in IMG/M
Scaffold IDGa0209803_1052477 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1797
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005385Metagenome / Metatranscriptome402Y
F007968Metagenome / Metatranscriptome341N

Sequences

Protein IDFamilyRBSSequence
Ga0209803_10524772F005385GAGMESRKKRRKRSKRLTSSRYKIRVRYKYHYYRWINTKDYGSFKDIYEKYKDKGYTYWCADLPPEFSNQDGTWTGYRLDGDKTHTASTLKRYGRHKSWIDPTYKFEGKPVILVYNAS
Ga0209803_10524773F007968N/ASKSRVSTWRDGRAPRESEMRYILTVDFEDDIDIESFMHFVAYHTKRLKCASKDVFIRLAHEWEKQLVNPHEPTNPNGVKKEKKKTLKETNE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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