NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209158_1000846

Scaffold Ga0209158_1000846


Overview

Basic Information
Taxon OID3300026333 Open in IMG/M
Scaffold IDGa0209158_1000846 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21483
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026841Metagenome196N
F043318Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0209158_100084612F026841GGGGGMERLDRYLIGVVLAHFVVNLVHATAHFGLQVLPAGLNLVFILGVILIGPIVALVILRFNPPLAAALIAVLMGASFVYGLVSHFVVPGPDNVTFIGSQTWTVLFVATAFLLGVLELGGLLVAVIAFWAAARTPSEPVARVG
Ga0209158_100084617F043318N/AVAIPQVGQLPEPLRLPHGSVRGAIAVIVTAAYGYVLLQGGSTPTVPTVLVNAVVVVIAFYFGSRAVSTPLAVQPGQPAPTVPHHPRLVRILLFLGFAGLTAWFLTRNPSLQGIPADLRAVLQVLAGYVLGATASRLVHRRAHESHIRHRLATFFRDIVAVGALGLTAYICFALVTKQGGLLAGRAEQALSLVVTFYFGSRVIGH
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