NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209158_1010956

Scaffold Ga0209158_1010956


Overview

Basic Information
Taxon OID3300026333 Open in IMG/M
Scaffold IDGa0209158_1010956 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4451
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016135Metagenome / Metatranscriptome249N
F032969Metagenome178Y
F082489Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209158_10109561F082489GAGMSFDLEQLREVAEKYAFHDASTHGVWPRLVWERRSDAPVARVDDAVEFLGKWKALRFKGGGRAFRRICSNWLRKNLTNLQRLQGRVLYSLAPEDFQHILDVSSSFRDCGAPPTTFGKAIHFFLPETVMLWDQAIVRNTYKLRPDPAS
Ga0209158_10109562F032969N/AMPRSPRDFYAHGQGIEPKTPRRPAPKVVRIPPPQLFRCPRCSAMSFQVLFHERDVAGFCAECNLRLRTDKTIDRRTPEYYAEFTRQVEASYPDRIQRIFLKTNSVSEAKRVYPVVRRLGYRTKQSSPMLHARLVMVETTRDKAVALIEKLREQGMQVALQDDFHSPPP
Ga0209158_10109566F016135N/ALVLRLKPNTPQNIYQTVKEIREISDVRTTDTHTGFDGMQPSKKLESQMALGFSLLNVQHTSVENTIKQLSNIPGFIEACTVPGQFDIVALWQARTSEDIVKNSFEKVTNLQGLFSSETLLAHLPFFNA
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Institute for Fundamental Biomedical Research
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