NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209377_1031432

Scaffold Ga0209377_1031432


Overview

Basic Information
Taxon OID3300026334 Open in IMG/M
Scaffold IDGa0209377_1031432 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2539
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005062Metagenome / Metatranscriptome413Y
F005487Metagenome / Metatranscriptome399Y
F073384Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209377_10314322F005062N/AMATAQAPTIRVQSSLVLVDVITQDRKSGLPVRDFKKGDFRLFDNRHEVRVATFDAGARYDTRSITLWLVVICNESGLPKFGASAEFLGQEALFRPALNHLEPHDSVGVAHWCDNGDSQLDLLPTEDRDKAIQELSEALKPIPFEGGTSASDEAGEQAFRKLIRLIIRDAYRRNPKPLPVIVFLHGDHTGQPHGELNKLVDDFLETSGIVFGIRDYRSPNLHFIIGEQAKIMHYMAKHTGGQYFSTSSSEYERTLETILMQLHFRYELGFIPPAIDGKRHELRVELTKEAKAGHKGLRLRYRPEYIPVREEPEWAH
Ga0209377_10314323F005487GAGGMEDEINHLLSRAESKFCTSNGGRCTSKTIGLLVRRHIVAGEFHYIGKEASTRWTGGADFSMMAEAGVLDPTDETCREYERVVDLKYLEEIRAQAKEFSTKRLSRKSGLAECAIRNFKKGKNTVRARSLRKLTKAIHDLQNKNVKN
Ga0209377_10314324F073384N/AKPSGHGLGFLKAPYSVADWQRMTRRKWKQDLPPWIFEAWHFILSRELGLPHQPPRWLKQPAAMAIPISTPQVMKRLGCFKDDLRPFTVVTVPFPEKEVNQLWTGYFVMPYTEKLNDLHGRPMVNVVSGATFYVYDKNSASFPKSSGWLALLL

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