NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209377_1081680

Scaffold Ga0209377_1081680


Overview

Basic Information
Taxon OID3300026334 Open in IMG/M
Scaffold IDGa0209377_1081680 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018583Metagenome234Y
F054746Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0209377_10816802F054746N/AMPSLFSSIFNQPCSHQFSWPERRSDGGHYQVCTRCGDQYVYDWETLARAEKITTSGQSRTLAPQPSARVPRTQRFTVRKVIFYRQVNHSQYHLAVLINISASGLLLECHPSIPEGTSLEMILEMPQEITGQPYRRVLCRGKVARSAFAKSGTPLVGVAISGYCFLQQR
Ga0209377_10816804F018583GGAGMDIIAQLKAERDKAAQQVNALDTAIRAMSGLNSTRVSHGPRKMSAAARARISASQKARSARVRGQKVGNLHGNVNRIPNGMN
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