NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209804_1000978

Scaffold Ga0209804_1000978


Overview

Basic Information
Taxon OID3300026335 Open in IMG/M
Scaffold IDGa0209804_1000978 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19726
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047193Metagenome / Metatranscriptome150Y
F053401Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0209804_100097814F047193N/AVSWISPEDAYLIFDKWREEQSPLQLVMRRPPGLRAVNSTFVKSVLPHSHQVLIAALVDGEYLNVAVNLEGAEYEYEDASAVLPEFAGGKWVCFLAANFPNGNRYVFGERAAAEA
Ga0209804_100097817F053401N/AVTFTSDELILALVGLVRATRPAMLRQEADGFSVDFEAIARSKTPGHADRLLLKMGAVMGSSTPYPAENPNSCVSLDLDAAEARKIADALAQLEVVQAWPQDVMKMSRALRARLTSDPGADSGDH
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