NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209804_1004672

Scaffold Ga0209804_1004672


Overview

Basic Information
Taxon OID3300026335 Open in IMG/M
Scaffold IDGa0209804_1004672 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7835
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002498Metagenome / Metatranscriptome553Y
F004048Metagenome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0209804_10046723F002498N/ALALMNAYIFGNTNCCCPRVKDQQRIYSLNKGVESLSKEEHGLFFDAVQSLGLPNEVKQAAVALYLDFKSRPIGEYNADHKNLDIFLIASISLSAKAMGDMRTDHEFESKMFVSREKLADAEERIIKSFGVQDSILPFPDLVSQLTKRQIESMADRFAERGLVSSNEREELVHRSYDYLDAAVEKGLGPKMSYRGRAAGVMLKAVRDLGLEVPEIDIARAAGFDKRSMAINTDIIDALLKDSST
Ga0209804_10046726F004048N/ALGRLGWRSWYERIKTGPTPEDNALLQLTRELSVQFQMSYWYKQVVWGRLDRYNSTGWIRSTPTIPSKEIVTVPGSLPEADLMLPEFLKGKLSLDEWKILIALHLVRFKAYNQTRMSRLLGKIALAPRGLFFLLLFYIPAAATGGLSGPVLYFPSPIFLIAALWIRRSLRKSLKRREFELDRNVAKQLGTQQVSQVLEKLEELDQKRIPADIRLFLLPYVAYWNPSIKERIRELGNPRLEDLPRPARIPKIGLRGRVIIVLVGFGIFWGAGLVESNFFARGQTMIVCTDVTCSALVVIAAVGFWMAIIGGISIVVWILRRFL
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