NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209804_1009159

Scaffold Ga0209804_1009159


Overview

Basic Information
Taxon OID3300026335 Open in IMG/M
Scaffold IDGa0209804_1009159 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5405
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001047Metagenome / Metatranscriptome793Y
F030393Metagenome185N

Sequences

Protein IDFamilyRBSSequence
Ga0209804_10091593F001047AGGMRFIRFLMRETMFDESYNIREVLDDVIERVTLREKLIQTAKGFAEKKKEERYTLAIRQFENLMTDFLRLYQPILDRLRSYREALQKELSTLKSSLATVNGMLEVSKGIEGLAARLQRLESDGQELDETIKEKSKIGDKIDDLFNRIRTHNPGIPGSGRDSFADVMSGMPKDLFPEEPTREAPGAKKTSSRS
Ga0209804_10091596F030393AGGMRVLLKVEKFFDLLMSFASIVGFASTAYLVWIFLHAPPTIQVGTTNVGVQGLSVAQPSTIVIQGVPFFWVFTSLISLSAGHTYRAAKHLVLSLAGKNYFPHAPHLMHTQPAPTPTAPRLRQTEPSQ
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