NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257151_1000444

Scaffold Ga0257151_1000444


Overview

Basic Information
Taxon OID3300026341 Open in IMG/M
Scaffold IDGa0257151_1000444 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3273
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036797Metagenome / Metatranscriptome169Y
F045202Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0257151_10004442F045202AGGMTTETADVLVVNRTDDLPTFCALAYQDKNPSVVSWIDFWAVEPCSSVEADYVRGQRYADEAIWHVRATGQPIFIECVLMFIGIKLRETDRCAGGLEQGFIDRIAGHFPGAMDNVLMRLLRRHPKTLN
Ga0257151_10004443F036797GGAGMSNVDWQNGVSDLNRNPLPDYYRPKPLRLDPVEDDDVAPRQMNAAVVDLGKLEQELGRRRLDEIADVVRALTYGEMMELAESMWNVKPDGSSLTEHNLPAVLYRWSTSRQS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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