NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257151_1004316

Scaffold Ga0257151_1004316


Overview

Basic Information
Taxon OID3300026341 Open in IMG/M
Scaffold IDGa0257151_1004316 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1451
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F000825Metagenome / Metatranscriptome874Y

Sequences

Protein IDFamilyRBSSequence
Ga0257151_10043161F000823GGAGGMRLTALATLVGVALATMSAPAMAAWRGYISHPLGFAFAAPGELKVEKGTYRGAVAGLHDTVVYRFVDDDIEYKVVVIDMGDQANDAATLLGEAEYLFQEDKKVLMDTFGRVDRQYGRKLTVDLPNNAGRTTAAFYFINGRIISLQATVLPANGDYDTPEMARFVESIAFFAVRASDDAIELPAPTK
Ga0257151_10043162F000825GGAGGMRRWMLAALAGSALVMAAMPAQAAWKSYINRELGFSFMAPGEVKSDVGTFRGAIAGPRQTIVYRSVEDNIEYKVTVMSFVQAQAEGPTILGEREYMFQDGKKVLTDTFGRVGSGKDAVYGRKIVIDLPNNKGRTTGAFYFTKGRLISLEATVLPPRGDFASPDPGRFVDSVAFVLSRTEPGAVELETPKLE
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