NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209057_1004295

Scaffold Ga0209057_1004295


Overview

Basic Information
Taxon OID3300026342 Open in IMG/M
Scaffold IDGa0209057_1004295 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10220
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y
F023077Metagenome211N
F041118Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0209057_10042953F041118GGAGGMTRLSFELVDPNTGEGASAEAAVDRKLIEDLNSFRSQGSTGKAFLIWIDTVKGEVSWQLRKVPDFDL
Ga0209057_10042955F023077GGALKKRIGVLAVLMITAMALLVSPVHPATMNPQENVNLYTGNRLVIDSNQPSIKSVVVRGNLTAATLSNNGYPSKNFTLTTNSTQIYTVDLLLSYQAPYTSEIVISDPSGSKTQFTSYFVSGGDLNLTIFASFQTAPSTGPSVPLGWSSFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLVAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED
Ga0209057_10042957F010022GGALLALALLFGVSDSTGLFFSIPISILNIILGLVTRAPPGLEIQPESARIKLVIDRGVVGASIYQLVFLNSKLILKRLSSVMVTVILAFVLAVVGLESLFIVGALMGGISGFSLQEFLTQRIRNKIGSEMELTSVGKNDIEIEYGDILEVRLVKSRLYLIAGIKSLSASFPRGYARKIEPMLTNIFESKFTTEESIRAAEAAEKENEKRQHPGGDRGKFPRRKNSVGFYE
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