NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209057_1118291

Scaffold Ga0209057_1118291


Overview

Basic Information
Taxon OID3300026342 Open in IMG/M
Scaffold IDGa0209057_1118291 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020872Metagenome / Metatranscriptome221N
F056503Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209057_11182911F056503AGGAGMNGNSMHWVNRLAALGLVVGLVAGLAAVGNAQSVGGQAYSTYVNTPLGYSGQSPLA
Ga0209057_11182912F020872N/AQRVLLPDRMASTLRSLRSGSALVGIVDSEEGRTHMMREHRSLIVWPSLIAAGLLAAACTDQPKVSMAPNRPAFWVVPPPAQCPTGKWTGGGRIDPPSNPDTPDEAVHPEFFPFELPSVTGKFTFGFNVFLGQDADGNCIVNKGEIEVNGHAQKIAWHVSIHDGVDAYDGRPVHATVFSDAHPGGFCLVVGMPFDFMTAREKGKGSTEPFELAQFEVCDNDRGQPQRGKPGPDAMRWRSEHHGDTHLIYLTGGNVVEHGS
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