NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257180_1045593

Scaffold Ga0257180_1045593


Overview

Basic Information
Taxon OID3300026354 Open in IMG/M
Scaffold IDGa0257180_1045593 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063531Metagenome / Metatranscriptome129N
F085463Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0257180_10455931F085463AGGAGLQTSPKKSTGYDLRRLVGSVNQLRFNDNKGEVSFFGQKMIILRRDVIRIMREALERLVGDQSAPFLSYLASGIGVHEGSIFRESIGSTGEQSRQSLENLVHSALEDTNLGLGKIQINGLDFDK
Ga0257180_10455932F063531N/AKPTFLTLNMIPPGVRIKDAVKVGQELSQLFRSHFLQAFEFQLDVINNLSRSVFVVDNPDSAFAKKVTEAADTLERELSGATKIAN
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