NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257150_1069035

Scaffold Ga0257150_1069035


Overview

Basic Information
Taxon OID3300026356 Open in IMG/M
Scaffold IDGa0257150_1069035 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)534
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026928Metagenome / Metatranscriptome196Y
F068351Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0257150_10690351F068351N/AIGGLTGPQTGGSYRISALAPSGNAVTGIGSLATQASQEVFTVTLPAR
Ga0257150_10690352F026928N/APFFMFGQLCVALCEADGEGLAAADAALAAVVPVVDDVVDVVDDVVDDGEEWLVAALATAMLPPNPTPSAPAPTAVPIMILPSLDFNVSAS

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