NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257179_1000763

Scaffold Ga0257179_1000763


Overview

Basic Information
Taxon OID3300026371 Open in IMG/M
Scaffold IDGa0257179_1000763 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2020
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001047Metagenome / Metatranscriptome793Y
F059803Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0257179_10007631F059803N/APARTNTMGTEMETSRHRRIGQLWILLAVLEFVVGGIVVLGGAALVYFSIDSTGVSLGIVHAILGLMAFPAGYLLLSGNARSRILTLGVDAAIVAFSIASEIILSTTSSLPSGPFADSVIGTAVAVLIAALIVYQLMRARPQLPAERPSSVR
Ga0257179_10007632F001047AGGMRVIRFLMRETMFDDSYNIREVLDDVIERVTLREKLIQTAKGFAEKKKEERYTLAIRQFENLMTDFLRLYQPILDRLRSYRDGLQKELSGLKSSLATVNGMLEVSKGIEGLAARLQRLESDGQELDETIKEKSKIGDKIDDLFNRIRTHNPGIPGSGRDSFADVMSGMPKDLFPEEPTREAPSAKKTSTRG
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