NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257146_1011556

Scaffold Ga0257146_1011556


Overview

Basic Information
Taxon OID3300026374 Open in IMG/M
Scaffold IDGa0257146_1011556 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1439
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034683Metagenome / Metatranscriptome174Y
F103763Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0257146_10115562F103763GGAGGVTSSSRKPARPATGPAATPRIPDPRAGERDTRETAEPYDLPFPDHWPPGRPEYVIVVDQLRGWRPGLPPSLAELLEAGPARTREPEPDLEAEP
Ga0257146_10115563F034683AGGAGGMTSDHRITPGLITDVLDALERHGYSRSHDLHADRAIGLIGDLACIYEGTQDHPATAYPIAVPPPAYPGPGRHDVITLTRADASTVFAASDIAADDKRYRVEMCPDCPDQSCPDCQTHLRDARAFDQMADHMLQAAQAAPAAAASKPGPDRGPQAAAGREAGQ
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