NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257146_1024231

Scaffold Ga0257146_1024231


Overview

Basic Information
Taxon OID3300026374 Open in IMG/M
Scaffold IDGa0257146_1024231 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010408Metagenome304Y
F038833Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0257146_10242312F010408GAGMFTQFLGTAATVYGVLGALKSLLQARQMLARRTSREVSARFLASYAGGYAIWLTYGLSTASLPLIVVDTVGLLCAGLTLAVALSLRGSLSRPATWSSCS
Ga0257146_10242313F038833AGGMHSYLMREIVRQREEDLLRAARHDGPAGPRSHRPVTAARTTRTGGGHMRAKPRILVALLLAAFH

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